species:   Rhsol
pid:       PID0554
parent:    Rhi-milR-95
paralog:   
locus:     KB317725.1:314756-314827
matures:   ['UAAAGACUGUUGUGAGAGAAGGCG', 'CUUCUUCAACCUUGACAGUUAUUUUGUG']
srr:       SRR1994873
genome:    /Users/jax/+Genomes/Fungal_genomes/Rhsol.AFRT00000000.1_scaffolds.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994873.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994873.cram KB317725.1:314756-314827

4 out of bounds
54 alignments
54 proper strand
28 stranded perfect matches

  ******************************            **************************  
GUUCCUUCUUCAACCUUGACAGUUAUUUUGUGUCACAACUAAGACUUAAAGACUGUUGUGAGAGAAGGCGAC
((((((((((..((...(((((((..((((.(((........))).)))))))))))))..))))))).)))
----------------------------------------------UAAAGACUGUUGUGAGAGAAGGCG-- l=24 a=4 c
----CUUCUUCAACCUUGACAGUUAUUUUGUG---------------------------------------- l=28 a=0 c*
----------------------------------------------UAAAGACUGUUGUGAGAGAAGGCG-- l=24 a=4 ma
----CUUCUUCAACCUUGACAGUUAUUUUGUG---------------------------------------- l=28 a=0 ma*

-------------------------------------------------AGACUGUUGUGAGAGAAGGCG-- l=21 a=2 
-------------------------------------------------AGACUGUUGUGAGAGAAGGCGA- l=22 a=1 
-------------------------------------------------AGACUGUUGUGAGAGAAGGCaA- l=22 a=1 
-------------------------------------------------AGACUGUUGUGAGAGAAGGCGAC l=23 a=3 
-------------------------------------------------AGACUGUUGUGAGAGAAGGaGAC l=23 a=1 
------------------------------------------------AAGACUGUUGUGAGAGAAGGaGAC l=24 a=2 
-----------------------------------------------AgAGACUGUUGUGAGAGAA------ l=19 a=1 
-----------------------------------------------AAAGACUGUUGUGAGAGAAGGaGA- l=24 a=3 
-----------------------------------------------AAAGACUGUUGUGAGAGAAGGCGA- l=24 a=1 
-----------------------------------------------AAAGACUGUUGUGAGAGAAGGaGAC l=25 a=1 
----------------------------------------------UAAAGACUGUUGUGAGAGAAGG---- l=22 a=2 
----------------------------------------------UAAAGACUGUUGUGAGAGAAGGC--- l=23 a=1 
----------------------------------------------aAAAGACUGUUGUGAGAGAAGGC--- l=23 a=1 
----------------------------------------------UAAAGACUGUUGUGAGAGAAGGCa-- l=24 a=9 
----------------------------------------------UAAAGACUGUUGUGAGAGAAGGCG-- l=24 a=4 (c,ma)
----------------------------------------------UAAAGACUGUUGUGAGAGAAGGaGA- l=25 a=1 
----------------------------------------------UAAAGACUGUUGUGAGAGAAGGCGAC l=26 a=1 
---------------------------------------------UUAAAGACUGUUGUGAGAGAAGG---- l=23 a=1 
---------------------------------------------UUAAAGACUGUUGUGAGAGAAGGC--- l=24 a=4 
---------------------------------------------UUAAAGACUGUUGUGAGAGAAGGCu-- l=25 a=2 
---------------------------------------------UUAAAGACUGUUGUGAGAGAAGGCG-- l=25 a=3 
---------------------------------------------UUAAAGACUGUUGUGAGAGAAGGCa-- l=25 a=1 
--------------------------------------------CUUAAAGACUGUUGUGAGAGAAGG---- l=24 a=1 
--------------------------------------------CUUAAAGACUGUUGUGAGAGAAGGC--- l=25 a=1 
--------------------------------------------CUUAAAGACUGUUGUGAGAGAAGGa--- l=25 a=1 
-------------------------------------------ACUUAAAGACUGUUGUGAGAGAAG----- l=24 a=1 
------------------------------------------GACUUAAAGACUGUUGUGAGAGAAGGa--- l=27 a=1 
-----------------------------------------AGACUUAAAGAuUGUUGUGAGAGA------- l=24 a=1 
-----------------------------------------AGACUUAAAGACUGUUGUGAGAGA------- l=24 a=1 
-------------------------------------ACUAAGACUUAAAGACUGUUGUG------------ l=23 a=1 

mb-01011
ax-1001011
ku-01
ss-101111101000
fn-111
